MLOC_16499 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.09198950.1645640.1833730.16347
LEAShoots from the seedlings (10 cm shoot stage)2.842673.636784.272352.95314
INF1Young developing inflorescences (5mm)0.6927681.494422.515371.57167
INF2Developing inflorescences (1-1.5 cm)3.524474.056124.083884.78743
ROORoots from the seedlings (10 cm shoot stage)0.594970.9226851.08631.05575
NODDeveloping tillers at six leaf stage, 3rd internode0.0887070.2712670.03835980.592102
CAR5Developing grain, bracts removed (5 DPA)0.9582720.6661870.7891710.871606
CAR15Developing grain, bracts removed (15 DPA)0.07839640.1404630.1862770.380018



CDS Structure of MLOC_16499






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16499.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370106NoneNoneNoneNone
MLOC_16499.1CUST_17943_PI427708080AvailableAvailablecontig_1573545 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g56810.1 -1 0.0 853 451/537 (84%) 13101.m06024 protein cytokinin dehydrogenase precursor, putative, expressed
TAIR PP10 AT1G75450.1 -1 0.0 613 343/528 (65%) | Symbols: CKX5, ATCKX5, ATCKX6 | cytokinin oxidase 5 | chr1:28315248-28318064 REVERSE LENGTH=540