MLOC_16489 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains34.634224.358226.843526.9769
LEAShoots from the seedlings (10 cm shoot stage)14.004312.220212.195210.2539
INF1Young developing inflorescences (5mm)20.201720.703719.45817.1699
INF2Developing inflorescences (1-1.5 cm)27.321721.920124.750126.9164
ROORoots from the seedlings (10 cm shoot stage)31.52723.413124.045427.2376
NODDeveloping tillers at six leaf stage, 3rd internode15.005812.426812.342238.0445
CAR5Developing grain, bracts removed (5 DPA)30.219230.547132.470630.1686
CAR15Developing grain, bracts removed (15 DPA)12.814712.385513.252530.4788



CDS Structure of MLOC_16489






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16489.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252542.1NoneNoneNoneNone
MLOC_16489.1CUST_17942_PI427708080AvailableAvailablecontig_1573527 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g34170.1 -3 6e-155 448 211/270 (78%) 13108.m03574 protein CAF1 family ribonuclease containing protein, putative, expressed
TAIR PP10 AT2G32070.1 -3 9e-121 360 172/266 (65%) Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr2:13640829-13641656 REVERSE LENGTH=275