MLOC_16460 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains146.6763.191178.138280.4857
LEAShoots from the seedlings (10 cm shoot stage)37.28363.2509410.342215.2008
INF1Young developing inflorescences (5mm)181.112194.55210.013142.216
INF2Developing inflorescences (1-1.5 cm)122.464185.527177.056156.542
ROORoots from the seedlings (10 cm shoot stage)85.077452.639579.42959.0714
NODDeveloping tillers at six leaf stage, 3rd internode0.6684290.6637820.6045225.32546
CAR5Developing grain, bracts removed (5 DPA)63.644271.498668.832560.1919
CAR15Developing grain, bracts removed (15 DPA)6.254023.043285.380610.9238



CDS Structure of MLOC_16460






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16460.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_16460.1CUST_11487_PI427708083AvailableAvailablecontig_1573456 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g05730.1 -1 5e-37 132 67/68 (99%) 13111.m00557 protein histone H3, putative, expressed
TAIR PP10 AT5G65360.1 -1 2e-37 132 67/68 (99%) Histone superfamily protein | chr5:26120099-26120509 REVERSE LENGTH=136