MLOC_16447 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.552990.7426470.8113290.669703
LEAShoots from the seedlings (10 cm shoot stage)0.3072130.081906500.177828
INF1Young developing inflorescences (5mm)1.462781.18391.176811.02262
INF2Developing inflorescences (1-1.5 cm)0.8173360.9232640.9836710.920025
ROORoots from the seedlings (10 cm shoot stage)0.5186290.6631770.6521030.710792
NODDeveloping tillers at six leaf stage, 3rd internode0.01916760.02301530.1115950.114271
CAR5Developing grain, bracts removed (5 DPA)0.6410410.7404140.5475750.588162
CAR15Developing grain, bracts removed (15 DPA)0.2156480.1849140.09442410.407762



CDS Structure of MLOC_16447






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16447.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_16447.1CUST_9445_PI427708080AvailableAvailablecontig_1573416 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g02280.1 -3 0.0 616 352/511 (69%) 13112.m00156 protein pentatricopeptide, putative, expressed
TAIR PP10 AT4G18840.1 -3 4e-96 314 155/369 (42%) Pentatricopeptide repeat (PPR-like) superfamily protein | chr4:10338719-10340356 REVERSE LENGTH=545