MLOC_16430 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains17.958814.849716.163713.7695
LEAShoots from the seedlings (10 cm shoot stage)9.9524611.071912.97967.90501
INF1Young developing inflorescences (5mm)0.3618710.2484420.07358560.187239
INF2Developing inflorescences (1-1.5 cm)0.2158630.07680340.3977860.193524
ROORoots from the seedlings (10 cm shoot stage)23.976122.413717.32419.8309
NODDeveloping tillers at six leaf stage, 3rd internode29.32123.697523.361456.1111
CAR5Developing grain, bracts removed (5 DPA)57.674850.045345.540941.6005
CAR15Developing grain, bracts removed (15 DPA)5.249786.34854.2386811.4796



CDS Structure of MLOC_16430






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16430.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249885.1NoneNoneNoneNone
MLOC_16430.1CUST_1627_PI427708080AvailableAvailablecontig_1573372 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g58860.1 -1 1e-100 316 173/218 (79%) 13104.m06200 protein harpin-induced protein 1 domain containing protein, expressed
TAIR PP10 AT3G44220.1 -1 2e-43 158 76/173 (44%) Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr3:15928216-15929645 FORWARD LENGTH=206