MLOC_16422 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.6305118.538116.097715.6932
LEAShoots from the seedlings (10 cm shoot stage)25.696828.737224.180922.0301
INF1Young developing inflorescences (5mm)32.211434.694340.211730.7226
INF2Developing inflorescences (1-1.5 cm)46.44565.940545.452759.9179
ROORoots from the seedlings (10 cm shoot stage)21.403425.739618.633329.5697
NODDeveloping tillers at six leaf stage, 3rd internode12.628717.855921.90460.0918
CAR5Developing grain, bracts removed (5 DPA)29.888430.270228.04228.9389
CAR15Developing grain, bracts removed (15 DPA)14.125313.373814.185533.3641



CDS Structure of MLOC_16422






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16422.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_16422.1CUST_9442_PI427708080AvailableAvailablecontig_157334 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g41090.3 +2 0.0 608 288/337 (85%) 13107.m04273 protein histone deacetylase, putative, expressed
TAIR PP10 AT5G61060.1 +2 5e-162 475 217/337 (64%) | Symbols: HDA05, HDA5, ATHDA5 | histone deacetylase 5 | chr5:24567137-24570917 REVERSE LENGTH=660