MLOC_16420 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains60.73260.262764.472865.5844
LEAShoots from the seedlings (10 cm shoot stage)83.5855103.86390.727484.2767
INF1Young developing inflorescences (5mm)39.574142.204745.467837.0751
INF2Developing inflorescences (1-1.5 cm)23.829826.713225.226529.1074
ROORoots from the seedlings (10 cm shoot stage)35.216539.849438.582351.7444
NODDeveloping tillers at six leaf stage, 3rd internode116.00291.402978.4828326.544
CAR5Developing grain, bracts removed (5 DPA)65.316266.228764.885166.9873
CAR15Developing grain, bracts removed (15 DPA)17.896916.60117.192141.2605



CDS Structure of MLOC_16420






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16420.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365435NoneNoneNoneNone
MLOC_16420.1CUST_1623_PI427708080AvailableAvailablecontig_1573332 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g55420.1 -2 0.0 803 391/443 (88%) 13102.m06354 protein aminotransferase, classes I and II, domain containing protein, expressed
TAIR PP10 AT4G31990.2 -2 0.0 714 341/417 (82%) | Symbols: ASP5, AAT3, ATAAT1 | aspartate aminotransferase 5 | chr4:15471074-15473521 REVERSE LENGTH=453