MLOC_16398 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.743212.138311.606213.0399
LEAShoots from the seedlings (10 cm shoot stage)4.557542.197412.129932.35251
INF1Young developing inflorescences (5mm)64.833874.53682.581370.1867
INF2Developing inflorescences (1-1.5 cm)66.479666.331867.690481.6231
ROORoots from the seedlings (10 cm shoot stage)14.033710.686716.662313.5084
NODDeveloping tillers at six leaf stage, 3rd internode4.341684.605454.4073711.2823
CAR5Developing grain, bracts removed (5 DPA)3.302892.872.668153.20995
CAR15Developing grain, bracts removed (15 DPA)1.387730.8799741.136143.00208



CDS Structure of MLOC_16398






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16398.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK358952NoneNoneNoneNone
MLOC_16398.2CUST_1621_PI427708080AvailableAvailablecontig_1573254 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g02250.1 -3 0.0 654 454/557 (82%) 13108.m00162 protein IQ calmodulin-binding motif domain containing protein, expressed
TAIR PP10 AT4G00820.1 -3 2e-97 315 221/452 (49%) | Symbols: iqd17 | IQ-domain 17 | chr4:349300-351307 FORWARD LENGTH=534