MLOC_16366 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains39.885129.207327.540931.2645
LEAShoots from the seedlings (10 cm shoot stage)28.966527.60637.004125.9186
INF1Young developing inflorescences (5mm)36.962738.850943.175332.9137
INF2Developing inflorescences (1-1.5 cm)36.218642.672242.279942.8024
ROORoots from the seedlings (10 cm shoot stage)51.024243.16844.085451.0471
NODDeveloping tillers at six leaf stage, 3rd internode42.83852.2766.2248166.976
CAR5Developing grain, bracts removed (5 DPA)35.048839.390431.692233.0576
CAR15Developing grain, bracts removed (15 DPA)16.647514.371810.824134.2554



CDS Structure of MLOC_16366






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16366.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_16366.1CUST_2361_PI427708083AvailableAvailablecontig_1573175 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g30624.2 -3 4e-28 108 52/53 (98%) 13102.m03346 protein LSM domain containing protein, expressed
TAIR PP10 AT2G43810.2 -3 4e-25 99 46/53 (87%) Small nuclear ribonucleoprotein family protein | chr2:18149725-18150879 FORWARD LENGTH=91