MLOC_16279 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains53.582583.146475.631673.1975
LEAShoots from the seedlings (10 cm shoot stage)64.494441.613740.414743.311
INF1Young developing inflorescences (5mm)106.97194.886485.230480.4121
INF2Developing inflorescences (1-1.5 cm)83.503697.775184.641896.8992
ROORoots from the seedlings (10 cm shoot stage)44.091376.232854.421286.3749
NODDeveloping tillers at six leaf stage, 3rd internode52.69359.550135.7681194.467
CAR5Developing grain, bracts removed (5 DPA)112.07102.78108.893102.154
CAR15Developing grain, bracts removed (15 DPA)39.567337.76736.959284.8478



CDS Structure of MLOC_16279






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16279.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370644NoneNoneNoneNone
MLOC_16279.1CUST_1613_PI427708080AvailableAvailablecontig_1572945 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g12820.1 +3 0.0 1463 799/991 (81%) 13108.m01368 protein proteasome/cyclosome repeat containing protein, expressed
TAIR PP10 AT2G32730.1 +3 0.0 1335 738/996 (74%) 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit | chr2:13880189-13885464 FORWARD LENGTH=1004