- Predicted Gene MLOC_16233
MLOC_16233 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 19.1528 | 19.0173 | 19.788 | 17.6357 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 11.3996 | 11.7304 | 14.1453 | 9.75339 |
| INF1 | Young developing inflorescences (5mm) | 32.4144 | 38.6697 | 41.4944 | 28.7973 |
| INF2 | Developing inflorescences (1-1.5 cm) | 37.9754 | 35.7892 | 34.5381 | 37.1344 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 14.3497 | 17.8263 | 20.3352 | 18.9683 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 6.42353 | 7.09738 | 8.02709 | 21.9747 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 19.2039 | 23.0337 | 21.0582 | 19.2161 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 5.75651 | 5.7144 | 4.73102 | 12.0225 |
CDS Structure of MLOC_16233
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_16233.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os03g55784.1 |
+1 |
1e-172 |
492 |
238/277 (86%) |
13103.m06077 protein tumor necrosis factor superfamily, member 5-induced protein 1, putative, expressed |
| TAIR PP10 |
AT3G18940.1 |
+1 |
1e-102 |
312 |
152/275 (55%) |
clast3-related | chr3:6527081-6529050 REVERSE LENGTH=281 |
