MLOC_16227 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains28.742426.408729.100926.9973
LEAShoots from the seedlings (10 cm shoot stage)20.858321.960622.144718.3854
INF1Young developing inflorescences (5mm)42.488846.203446.824836.2114
INF2Developing inflorescences (1-1.5 cm)32.963233.116437.788735.5518
ROORoots from the seedlings (10 cm shoot stage)14.730227.951535.574831.6132
NODDeveloping tillers at six leaf stage, 3rd internode20.372914.531923.413153.5543
CAR5Developing grain, bracts removed (5 DPA)18.501420.69418.223817.9997
CAR15Developing grain, bracts removed (15 DPA)9.33159.366977.5945619.5082



CDS Structure of MLOC_16227






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16227.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_16227.1CUST_9415_PI427708080AvailableAvailablecontig_157281 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g28640.1 +2 9e-140 418 208/223 (93%) 13110.m02443 protein RIO1 family protein, expressed
TAIR PP10 AT5G26110.1 +2 7e-118 346 167/226 (74%) Protein kinase superfamily protein | chr5:9118239-9119352 REVERSE LENGTH=226