MLOC_16209 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.252097.111266.22856.69778
LEAShoots from the seedlings (10 cm shoot stage)6.310245.757525.614775.39362
INF1Young developing inflorescences (5mm)20.281419.801219.326518.1647
INF2Developing inflorescences (1-1.5 cm)34.345532.550733.583539.7188
ROORoots from the seedlings (10 cm shoot stage)3.171316.102996.089217.89109
NODDeveloping tillers at six leaf stage, 3rd internode5.627025.867458.7051622.3612
CAR5Developing grain, bracts removed (5 DPA)12.705812.923513.290814.0357
CAR15Developing grain, bracts removed (15 DPA)1.76761.501132.881934.85707



CDS Structure of MLOC_16209






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16209.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_16209.1CUST_2340_PI427708083AvailableAvailablecontig_1572753 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g40710.1 +2 8e-71 228 118/156 (76%) 13106.m04241 protein Myb-like DNA-binding domain containing protein, putative, expressed
TAIR PP10 AT2G01060.1 +2 2e-48 167 81/116 (70%) myb-like HTH transcriptional regulator family protein | chr2:73456-74902 REVERSE LENGTH=286