MLOC_16202 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains26.405717.70818.281320.5443
LEAShoots from the seedlings (10 cm shoot stage)6.973096.772288.678956.15432
INF1Young developing inflorescences (5mm)25.641829.678929.471226.2642
INF2Developing inflorescences (1-1.5 cm)28.394425.634325.634432.3642
ROORoots from the seedlings (10 cm shoot stage)27.344218.59120.237223.3816
NODDeveloping tillers at six leaf stage, 3rd internode1.959932.702876.04119.60423
CAR5Developing grain, bracts removed (5 DPA)15.335816.234915.752617.2872
CAR15Developing grain, bracts removed (15 DPA)3.793723.398122.368078.57446



CDS Structure of MLOC_16202






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16202.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375938NoneNoneNoneNone
MLOC_16202.1CUST_1606_PI427708080AvailableAvailablecontig_1572730 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g03790.1 -1 3e-78 235 117/145 (81%) 13106.m00321 protein 39S ribosomal protein L47, mitochondrial precursor, putative, expressed
TAIR PP10 AT1G07830.1 -1 2e-61 191 97/143 (68%) ribosomal protein L29 family protein | chr1:2422549-2423392 FORWARD LENGTH=144