MLOC_16173 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1814780.1026310.1865420.153518
LEAShoots from the seedlings (10 cm shoot stage)00.021248800.0181735
INF1Young developing inflorescences (5mm)0.1530890.2164870.151030.160266
INF2Developing inflorescences (1-1.5 cm)0.2658920.3182370.3819990.363184
ROORoots from the seedlings (10 cm shoot stage)0.08532420.08577460.07408940.120788
NODDeveloping tillers at six leaf stage, 3rd internode0.05698520.3083270.1596141.07119
CAR5Developing grain, bracts removed (5 DPA)2.349961.856232.135812.13229
CAR15Developing grain, bracts removed (15 DPA)2.160751.732121.748774.5577



CDS Structure of MLOC_16173






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16173.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_16173.1CUST_9408_PI427708080AvailableAvailablecontig_1572609 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g32430.1 -1 0.0 1578 886/1115 (79%) 13107.m03288 protein pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16, putative, expressed
TAIR PP10 AT5G13010.1 -1 0.0 1376 756/1005 (75%) | Symbols: EMB3011 | RNA helicase family protein | chr5:4122747-4128660 FORWARD LENGTH=1255