MLOC_1613 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.1672412.13811.414210.7145
LEAShoots from the seedlings (10 cm shoot stage)8.898585.948936.006925.73865
INF1Young developing inflorescences (5mm)12.685312.786714.003211.6178
INF2Developing inflorescences (1-1.5 cm)16.532115.685321.424919.1637
ROORoots from the seedlings (10 cm shoot stage)7.810689.427914.241710.9114
NODDeveloping tillers at six leaf stage, 3rd internode13.61659.204628.1299426.3305
CAR5Developing grain, bracts removed (5 DPA)12.354712.68312.749812.5283
CAR15Developing grain, bracts removed (15 DPA)5.893834.396285.0795912.3709



CDS Structure of MLOC_1613






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_1613.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_1613.2CUST_2329_PI427708083AvailableAvailablecontig_114196 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g40890.1 +2 9e-19 88 65/123 (53%) 13112.m04260 protein OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed
TAIR PP10 AT4G13510.1 -1 5e-14 75 34/47 (72%) | Symbols: AMT1;1, ATAMT1, ATAMT1;1 | ammonium transporter 1;1 | chr4:7858220-7859725 FORWARD LENGTH=501