MLOC_16079 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.326462.516120.9649592.30069
LEAShoots from the seedlings (10 cm shoot stage)1.1435401.514871.16934
INF1Young developing inflorescences (5mm)3.719893.826743.944332.90075
INF2Developing inflorescences (1-1.5 cm)4.791213.932864.620264.33917
ROORoots from the seedlings (10 cm shoot stage)00.33386201.38689
NODDeveloping tillers at six leaf stage, 3rd internode0.8324681.625025.268856.34808
CAR5Developing grain, bracts removed (5 DPA)2.653261.475270.3585421.38382
CAR15Developing grain, bracts removed (15 DPA)0.338614001.23767



CDS Structure of MLOC_16079






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16079.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_16079.1CUST_2321_PI427708083AvailableAvailablecontig_1572316 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g72880.1 +2 2e-31 107 48/65 (74%) 13101.m07948 protein DNA mismatch repair protein Mlh1, putative, expressed
TAIR PP10 AT4G09140.1 +2 2e-26 97 42/65 (65%) | Symbols: ATMLH1, MLH1 | MUTL-homologue 1 | chr4:5817107-5821035 REVERSE LENGTH=737