MLOC_1607 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.741954.587353.644163.93082
LEAShoots from the seedlings (10 cm shoot stage)5.007284.941193.797314.26135
INF1Young developing inflorescences (5mm)8.354518.223618.855077.31385
INF2Developing inflorescences (1-1.5 cm)10.10629.869727.8895810.7792
ROORoots from the seedlings (10 cm shoot stage)1.697392.586562.127213.33744
NODDeveloping tillers at six leaf stage, 3rd internode2.041062.612953.7628410.6105
CAR5Developing grain, bracts removed (5 DPA)4.42424.430024.446424.54014
CAR15Developing grain, bracts removed (15 DPA)2.469182.263011.90645.33307



CDS Structure of MLOC_1607






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_1607.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376826NoneNoneNoneNone
MLOC_1607.2CUST_17936_PI427708080AvailableAvailablecontig_1572096 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g10780.1 +3 0.0 1596 995/1528 (65%) 13103.m01209 protein flap endonuclease, putative, expressed
TAIR PP10 AT3G28030.1 +3 0.0 716 515/1287 (40%) | Symbols: UVH3, UVR1 | 5-3 exonuclease family protein | chr3:10424321-10431178 FORWARD LENGTH=1479