MLOC_15954 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.7186812.641111.987912.6228
LEAShoots from the seedlings (10 cm shoot stage)14.29074.281296.260077.55184
INF1Young developing inflorescences (5mm)28.115334.106835.165828.2558
INF2Developing inflorescences (1-1.5 cm)37.02938.067935.994642.9561
ROORoots from the seedlings (10 cm shoot stage)12.178114.983114.256319.2491
NODDeveloping tillers at six leaf stage, 3rd internode17.523319.44946.6500860.8262
CAR5Developing grain, bracts removed (5 DPA)14.618915.61111.787314.7707
CAR15Developing grain, bracts removed (15 DPA)1.700811.337561.794343.77038



CDS Structure of MLOC_15954






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15954.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_15954.2CUST_9383_PI427708080AvailableAvailablecontig_1571959 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g24940.2 +3 0.0 804 415/489 (85%) 13103.m02941 protein proline-rich family protein, putative, expressed
TAIR PP10 AT2G26770.2 +3 9e-165 487 252/483 (52%) plectin-related | chr2:11404257-11407743 REVERSE LENGTH=496