MLOC_15917 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.367712.337714.511212.9343
LEAShoots from the seedlings (10 cm shoot stage)764.5791404.35674.755688.282
INF1Young developing inflorescences (5mm)0.06917040.075184200.0645366
INF2Developing inflorescences (1-1.5 cm)1.554371.393492.065341.59044
ROORoots from the seedlings (10 cm shoot stage)1.7789247.08612.2605335.5358
NODDeveloping tillers at six leaf stage, 3rd internode12.683327.94890.45399359.2786
CAR5Developing grain, bracts removed (5 DPA)43.864554.174351.958442.8312
CAR15Developing grain, bracts removed (15 DPA)5.926692.5936.0560710.3358



CDS Structure of MLOC_15917






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15917.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370109NoneNoneNoneNone
MLOC_15917.1CUST_1580_PI427708080AvailableAvailablecontig_1571868 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g24070.1 -2 1e-31 120 54/89 (61%) 13111.m02293 protein LTPL10 - Protease inhibitor/seed storage/LTP family protein precursor, expressed
TAIR PP10 AT5G59310.1 -2 6e-23 95 42/86 (49%) | Symbols: LTP4 | lipid transfer protein 4 | chr5:23925296-23925772 REVERSE LENGTH=112