MLOC_15897 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.208293.609564.216972.99741
LEAShoots from the seedlings (10 cm shoot stage)5.138012.543734.283213.22334
INF1Young developing inflorescences (5mm)7.796179.144659.482435.98243
INF2Developing inflorescences (1-1.5 cm)11.26598.6227811.5679.05355
ROORoots from the seedlings (10 cm shoot stage)5.802044.84915.902364.40628
NODDeveloping tillers at six leaf stage, 3rd internode3.774961.466674.5235512.8543
CAR5Developing grain, bracts removed (5 DPA)7.304837.204957.267825.37578
CAR15Developing grain, bracts removed (15 DPA)2.306352.076822.514644.0514



CDS Structure of MLOC_15897






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15897.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252112.1NoneNoneNoneNone
MLOC_15897.2CUST_13488_PI427708083AvailableAvailablecontig_1571479 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g51610.3 -3 7e-17 86 54/101 (53%) 13104.m11942 protein calcium-transporting ATPase, plasma membrane-type, putative, expressed
TAIR PP10 AT5G57110.2 -3 4e-16 81 39/65 (60%) | Symbols: ACA8, AT-ACA8 | autoinhibited Ca2+ -ATPase, isoform 8 | chr5:23109729-23116857 REVERSE LENGTH=1074