MLOC_15896 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.825261.849651.136612.05455
LEAShoots from the seedlings (10 cm shoot stage)1.802921.195642.849011.38734
INF1Young developing inflorescences (5mm)2.128542.582242.615841.98434
INF2Developing inflorescences (1-1.5 cm)2.244053.167592.48812.92453
ROORoots from the seedlings (10 cm shoot stage)3.090931.804553.235492.76699
NODDeveloping tillers at six leaf stage, 3rd internode1.215422.942794.42533.6784
CAR5Developing grain, bracts removed (5 DPA)1.610421.946951.56351.78917
CAR15Developing grain, bracts removed (15 DPA)0.9696550.5839450.4222051.64818



CDS Structure of MLOC_15896






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15896.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_15896.1NoneAvailableAvailablecontig_1571825 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g47840.1 +2 2e-35 122 58/91 (64%) 13103.m05159 protein retrotransposon protein, putative, unclassified
TAIR PP10 AT5G57110.2 -2 7e-16 81 39/65 (60%) | Symbols: ACA8, AT-ACA8 | autoinhibited Ca2+ -ATPase, isoform 8 | chr5:23109729-23116857 REVERSE LENGTH=1074