MLOC_1589 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.726672.784592.768752.46875
LEAShoots from the seedlings (10 cm shoot stage)1.750461.553011.271811.35797
INF1Young developing inflorescences (5mm)4.291475.545766.069914.21756
INF2Developing inflorescences (1-1.5 cm)14.933916.002616.36316.3948
ROORoots from the seedlings (10 cm shoot stage)2.539462.684722.812813.17554
NODDeveloping tillers at six leaf stage, 3rd internode1.826621.864871.899216.00713
CAR5Developing grain, bracts removed (5 DPA)10.089310.32587.740288.74302
CAR15Developing grain, bracts removed (15 DPA)2.606692.401663.049635.71974



CDS Structure of MLOC_1589






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_1589.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_1589.1CUST_11465_PI427708083AvailableAvailablecontig_114067 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g30580.1 +2 4e-92 301 148/155 (95%) 13110.m02634 protein cell division control protein 48 homolog E, putative, expressed
TAIR PP10 AT3G53230.1 +2 4e-90 295 145/155 (94%) ATPase, AAA-type, CDC48 protein | chr3:19723416-19726489 FORWARD LENGTH=815