MLOC_1588 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0.082310.2243290.3252890.196682
CAR15Developing grain, bracts removed (15 DPA)0.6128230.4513460.9100351.63501



CDS Structure of MLOC_1588






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_1588.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_1588.1CUST_9380_PI427708080AvailableAvailablecontig_114064 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g13900.1 -1 1e-75 191 97/156 (62%) 13106.m01536 protein transposon protein, putative, unclassified
TAIR PP10 AT4G15090.1 -1 4e-33 114 63/149 (42%) | Symbols: FAR1 | FRS (FAR1 Related Sequences) transcription factor family | chr4:8614806-8617870 FORWARD LENGTH=827