MLOC_15858 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.016846.83256.537867.04535
LEAShoots from the seedlings (10 cm shoot stage)8.03267.710687.191557.31119
INF1Young developing inflorescences (5mm)16.601318.041918.105216.1232
INF2Developing inflorescences (1-1.5 cm)33.495427.601125.153334.3791
ROORoots from the seedlings (10 cm shoot stage)6.835457.713656.6226310.8558
NODDeveloping tillers at six leaf stage, 3rd internode3.984427.07518.5363227.6279
CAR5Developing grain, bracts removed (5 DPA)12.619412.523312.787313.7808
CAR15Developing grain, bracts removed (15 DPA)5.947085.764346.0526914.6583



CDS Structure of MLOC_15858






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15858.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354286NoneNoneNoneNone
MLOC_15858.1CUST_1573_PI427708080AvailableAvailablecontig_157173 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g59680.1 +3 0.0 550 350/532 (66%) 13103.m06550 protein PAPA-1-like conserved region family protein, expressed
TAIR PP10 AT1G56460.1 +3 5e-61 216 173/474 (36%) HIT zinc finger ;PAPA-1-like conserved region | chr1:21146765-21149468 FORWARD LENGTH=502