MLOC_15823 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains69.592980.284774.0886.4549
LEAShoots from the seedlings (10 cm shoot stage)65.772166.191761.321860.4103
INF1Young developing inflorescences (5mm)102.911107.90897.868794.8821
INF2Developing inflorescences (1-1.5 cm)130.395121.68128.629150.77
ROORoots from the seedlings (10 cm shoot stage)56.99771.311478.968998.9053
NODDeveloping tillers at six leaf stage, 3rd internode54.041156.020868.865220.814
CAR5Developing grain, bracts removed (5 DPA)72.474479.377271.010481.8769
CAR15Developing grain, bracts removed (15 DPA)16.434815.133414.341639.158



CDS Structure of MLOC_15823






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15823.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248900.1NoneNoneNoneNone
MLOC_15823.1CUST_1571_PI427708080AvailableAvailablecontig_1571621 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g11050.1 +3 0.0 744 408/424 (96%) 13102.m01245 protein 26S protease regulatory subunit, putative, expressed
TAIR PP10 AT5G19990.1 +3 0.0 702 385/419 (92%) | Symbols: RPT6A, ATSUG1 | regulatory particle triple-A ATPase 6A | chr5:6752144-6754918 FORWARD LENGTH=419