MLOC_15772 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0.187337000.190999
INF1Young developing inflorescences (5mm)0.153718000.148332
INF2Developing inflorescences (1-1.5 cm)0.04600610.343510.06124120.217986
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)0.6046470.17295201.18094



CDS Structure of MLOC_15772






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15772.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_15772.1CUST_2289_PI427708083AvailableAvailablecontig_1571499 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g16090.1 -1 2e-85 233 116/215 (54%) 13102.m01803 protein retrotransposon protein, putative, LINE subclass
TAIR PP10 AT1G43760.1 -1 2e-16 80 59/185 (32%) DNAse I-like superfamily protein | chr1:16528880-16531065 REVERSE LENGTH=626