MLOC_15771 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains23.868413.947515.509915.6764
LEAShoots from the seedlings (10 cm shoot stage)10.641112.873212.31859.1765
INF1Young developing inflorescences (5mm)17.341220.160521.110513.9098
INF2Developing inflorescences (1-1.5 cm)13.949416.475715.18814.8109
ROORoots from the seedlings (10 cm shoot stage)13.915314.217916.965215.2028
NODDeveloping tillers at six leaf stage, 3rd internode7.224138.01849.8418224.9918
CAR5Developing grain, bracts removed (5 DPA)14.224618.430119.813614.7732
CAR15Developing grain, bracts removed (15 DPA)4.880114.490932.716098.53214



CDS Structure of MLOC_15771






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15771.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_15771.1CUST_11460_PI427708083AvailableAvailablecontig_1571499 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g16540.1 +1 1e-40 154 77/96 (80%) 13101.m01849 protein NEDD8-activating enzyme E1 catalytic subunit, putative, expressed
TAIR PP10 AT5G19180.1 +1 6e-19 89 47/93 (51%) | Symbols: ECR1 | E1 C-terminal related 1 | chr5:6453375-6455750 FORWARD LENGTH=454