MLOC_15744 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains29.664113.212714.668616.2024
LEAShoots from the seedlings (10 cm shoot stage)10.52162.403184.18674.94711
INF1Young developing inflorescences (5mm)37.907645.063537.295327.9112
INF2Developing inflorescences (1-1.5 cm)21.770231.077128.073426.1301
ROORoots from the seedlings (10 cm shoot stage)19.318713.029614.611813.5032
NODDeveloping tillers at six leaf stage, 3rd internode1.418722.060224.455447.99662
CAR5Developing grain, bracts removed (5 DPA)10.683514.1614.229111.0051
CAR15Developing grain, bracts removed (15 DPA)2.341792.073091.521314.58518



CDS Structure of MLOC_15744






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15744.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_15744.1CUST_11458_PI427708083AvailableAvailablecontig_1571451 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g05900.1 +1 2e-25 100 51/51 (100%) 13101.m00576 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative
TAIR PP10 AT5G22880.1 +1 2e-24 96 48/51 (94%) | Symbols: H2B, HTB2 | histone B2 | chr5:7652130-7652567 REVERSE LENGTH=145