MLOC_15730 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.11380600.06828640.0935331
LEAShoots from the seedlings (10 cm shoot stage)110.58186.118236.325156.861
INF1Young developing inflorescences (5mm)0.160220.3699660.1508630.239355
INF2Developing inflorescences (1-1.5 cm)0.3368680.08084280.05024910.202371
ROORoots from the seedlings (10 cm shoot stage)0.2162770.1217730.1385950.189698
NODDeveloping tillers at six leaf stage, 3rd internode33.17731.085455.9476112.028
CAR5Developing grain, bracts removed (5 DPA)1.962742.283130.7455061.89138
CAR15Developing grain, bracts removed (15 DPA)0.1138040.131030.2188260.44367



CDS Structure of MLOC_15730






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15730.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365493NoneNoneNoneNone
MLOC_15730.2CUST_1558_PI427708080AvailableAvailablecontig_1571422 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g71190.1 -3 5e-78 239 143/183 (78%) 13101.m07752 protein photosystem II reaction center PSB28 protein, chloroplast precursor, putative, expressed
TAIR PP10 AT4G28660.1 -3 7e-57 184 89/145 (61%) | Symbols: PSB28 | photosystem II reaction center PSB28 protein | chr4:14150008-14150933 FORWARD LENGTH=183