MLOC_15674 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.158143.979064.581695.35902
LEAShoots from the seedlings (10 cm shoot stage)3.20841.984942.910482.61897
INF1Young developing inflorescences (5mm)0.4628910.684410.7422850.610422
INF2Developing inflorescences (1-1.5 cm)0.2075550.08337010.1936870.182773
ROORoots from the seedlings (10 cm shoot stage)10.635511.119810.171816.9002
NODDeveloping tillers at six leaf stage, 3rd internode15.007216.412515.609358.963
CAR5Developing grain, bracts removed (5 DPA)0.6172571.131140.915591.08057
CAR15Developing grain, bracts removed (15 DPA)2.276971.931342.678285.96341



CDS Structure of MLOC_15674






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15674.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_15674.1CUST_9354_PI427708080AvailableAvailablecontig_1571275 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g47460.1 -3 5e-22 93 48/64 (75%) 13107.m05051 protein expressed protein
TAIR PP10 AT4G15790.1 -3 6e-14 70 35/103 (34%) unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 411 Blast hits to 380 proteins in 121 species: Archae - 4; Bacteria - 107; Metazoa - 85; Fungi - 29; Plants - 59; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). | chr4:8982390-8984069 FORWARD LENGTH=147