MLOC_15585 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.752139.345988.439.03034
LEAShoots from the seedlings (10 cm shoot stage)8.865483.950223.208874.67484
INF1Young developing inflorescences (5mm)12.504612.055113.351410.6826
INF2Developing inflorescences (1-1.5 cm)15.716217.643815.744818.4951
ROORoots from the seedlings (10 cm shoot stage)5.070458.338556.86729.51979
NODDeveloping tillers at six leaf stage, 3rd internode9.887558.556058.9681928.4058
CAR5Developing grain, bracts removed (5 DPA)9.544098.463499.417129.00777
CAR15Developing grain, bracts removed (15 DPA)3.644943.630684.025768.53009



CDS Structure of MLOC_15585






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15585.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375597NoneNoneNoneNone
MLOC_15585.1CUST_1546_PI427708080AvailableAvailablecontig_1571063 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g18830.1 +3 0.0 889 474/590 (80%) 13106.m02010 protein AGC_PVPK_like_kin82y.13 - ACG kinases include homologs to PKA, PKG and PKC, expressed
TAIR PP10 AT5G47750.1 +3 0.0 715 383/541 (71%) | Symbols: D6PKL2, PK5 | D6 protein kinase like 2 | chr5:19339947-19341864 REVERSE LENGTH=586