MLOC_15580 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.286084.24424.358184.82548
LEAShoots from the seedlings (10 cm shoot stage)1.136860.6801470.04082640.554941
INF1Young developing inflorescences (5mm)0.04911300.03094750.0346298
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)65.123756.179363.209978.0763
NODDeveloping tillers at six leaf stage, 3rd internode0.021322100.01601510.02254
CAR5Developing grain, bracts removed (5 DPA)000.05888350.105901
CAR15Developing grain, bracts removed (15 DPA)0.027292400.0401830.0700888



CDS Structure of MLOC_15580






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15580.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_15580.1CUST_9342_PI427708080AvailableAvailablecontig_1571059 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g32920.5 +3 0.0 594 308/425 (72%) 13104.m03166 protein potassium transporter, putative, expressed
TAIR PP10 AT4G13420.1 +3 7e-135 414 216/426 (51%) | Symbols: HAK5, ATHAK5 | high affinity K+ transporter 5 | chr4:7797038-7802174 REVERSE LENGTH=785