MLOC_15558 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.820091.993983.305472.88949
LEAShoots from the seedlings (10 cm shoot stage)0.7566350.9305050.8421580.687606
INF1Young developing inflorescences (5mm)0.8363770.7108520.7494270.733732
INF2Developing inflorescences (1-1.5 cm)0.3463820.1842120.1092570.268534
ROORoots from the seedlings (10 cm shoot stage)6.900823.44833.607014.36123
NODDeveloping tillers at six leaf stage, 3rd internode1.69235.7969.6761917.8667
CAR5Developing grain, bracts removed (5 DPA)5.428996.731935.279116.57777
CAR15Developing grain, bracts removed (15 DPA)6.905665.168076.1988616.3227



CDS Structure of MLOC_15558






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15558.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365086NoneNoneNoneNone
MLOC_15558.1CUST_1543_PI427708080AvailableAvailablecontig_1571016 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g55070.1 +3 1e-153 441 235/320 (73%) 13104.m05704 protein gibberellin 20 oxidase 2, putative
TAIR PP10 AT3G19010.1 +3 1e-31 124 89/290 (31%) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:6556306-6557862 REVERSE LENGTH=349