MLOC_15522 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.104786.973997.479077.8391
LEAShoots from the seedlings (10 cm shoot stage)18.597137.455836.87927.3735
INF1Young developing inflorescences (5mm)11.120514.071312.602811.0598
INF2Developing inflorescences (1-1.5 cm)17.935216.303316.573219.2966
ROORoots from the seedlings (10 cm shoot stage)5.4431410.15357.240611.7963
NODDeveloping tillers at six leaf stage, 3rd internode10.000912.41116.192645.9222
CAR5Developing grain, bracts removed (5 DPA)12.205816.603113.566814.9317
CAR15Developing grain, bracts removed (15 DPA)8.763249.6203510.366922.2925



CDS Structure of MLOC_15522






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15522.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251289.1NoneNoneNoneNone
MLOC_15522.2CUST_1538_PI427708080AvailableAvailablecontig_1570923 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g40720.1 +3 4e-134 393 187/224 (83%) 13106.m04243 protein EF hand family protein, putative, expressed
TAIR PP10 AT4G26470.1 +3 6e-100 305 148/207 (71%) Calcium-binding EF-hand family protein | chr4:13371377-13372343 FORWARD LENGTH=231