MLOC_15470 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.05193.616153.842712.92879
LEAShoots from the seedlings (10 cm shoot stage)5.411033.666974.836053.37111
INF1Young developing inflorescences (5mm)4.179394.542475.214623.23153
INF2Developing inflorescences (1-1.5 cm)4.404965.139595.359094.47294
ROORoots from the seedlings (10 cm shoot stage)3.83514.764494.608454.34169
NODDeveloping tillers at six leaf stage, 3rd internode3.467683.626094.1503710.1994
CAR5Developing grain, bracts removed (5 DPA)5.66095.10875.474244.25634
CAR15Developing grain, bracts removed (15 DPA)3.009493.089653.135055.88438



CDS Structure of MLOC_15470






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15470.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_15470.1CUST_9325_PI427708080AvailableAvailablecontig_1570779 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g32650.1 +1 1e-161 502 347/486 (71%) 13108.m03394 protein cation efflux family protein, putative, expressed
TAIR PP10 AT2G04620.1 +1 3e-88 304 167/253 (66%) Cation efflux family protein | chr2:1610506-1612902 REVERSE LENGTH=798