MLOC_15459 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains128.788101.84692.2388116.575
LEAShoots from the seedlings (10 cm shoot stage)30.174443.376263.486940.7757
INF1Young developing inflorescences (5mm)66.593795.983170.063576.8013
INF2Developing inflorescences (1-1.5 cm)28.26827.930930.478934.3948
ROORoots from the seedlings (10 cm shoot stage)242.549247.45384.689339.337
NODDeveloping tillers at six leaf stage, 3rd internode79.839151.44442.4132151.42
CAR5Developing grain, bracts removed (5 DPA)65.931367.183660.427470.4072
CAR15Developing grain, bracts removed (15 DPA)211.785216.538174.935544.672



CDS Structure of MLOC_15459






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15459.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252431.1NoneNoneNoneNone
MLOC_15459.1CUST_1531_PI427708080AvailableAvailablecontig_1570753 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g47670.2 +2 5e-53 172 82/101 (81%) 13107.m05089 protein hypoxia-responsive family protein, putative, expressed
TAIR PP10 AT5G27760.1 +2 1e-34 123 56/89 (63%) Hypoxia-responsive family protein | chr5:9830396-9831559 FORWARD LENGTH=96