MLOC_15453 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8458773.392394.329772.41769
LEAShoots from the seedlings (10 cm shoot stage)6.856522.627352.560253.30743
INF1Young developing inflorescences (5mm)12.412610.7714.17788.79826
INF2Developing inflorescences (1-1.5 cm)17.219521.510226.911819.7866
ROORoots from the seedlings (10 cm shoot stage)1.361141.871982.32791.88282
NODDeveloping tillers at six leaf stage, 3rd internode4.53134.956162.6690113.6033
CAR5Developing grain, bracts removed (5 DPA)8.890048.163148.191566.89906
CAR15Developing grain, bracts removed (15 DPA)11.770211.603713.168623.7045



CDS Structure of MLOC_15453






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15453.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_15453.1CUST_2257_PI427708083AvailableAvailablecontig_157073 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g36920.1 +1 1e-33 133 68/79 (86%) 13101.m03743 protein DEAD-box ATP-dependent RNA helicase, putative, expressed
TAIR PP10 AT5G11170.1 +1 4e-32 127 70/98 (71%) DEAD/DEAH box RNA helicase family protein | chr5:3553334-3556646 FORWARD LENGTH=427