- Predicted Gene MLOC_15402
MLOC_15402 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 45.4123 | 46.3498 | 54.2145 | 41.2289 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 27.072 | 36.3698 | 40.3575 | 25.3742 |
| INF1 | Young developing inflorescences (5mm) | 12.7461 | 13.9114 | 17.5279 | 10.0331 |
| INF2 | Developing inflorescences (1-1.5 cm) | 17.8194 | 17.4281 | 18.3451 | 16.7056 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 17.4442 | 18.476 | 17.8178 | 18.5796 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 25.6838 | 24.6862 | 28.5089 | 75.1413 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 13.5763 | 14.1475 | 15.5552 | 11.5733 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 8.21554 | 7.58622 | 8.93757 | 15.4113 |
CDS Structure of MLOC_15402
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_15402.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os12g41800.1 |
-3 |
4e-177 |
521 |
257/368 (70%) |
13112.m04371 protein VTC2, putative, expressed |
| TAIR PP10 |
AT4G26850.1 |
-3 |
5e-39 |
152 |
105/328 (32%) |
| Symbols: VTC2 | mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase | chr4:13499262-13501145 REVERSE LENGTH=442 |
