MLOC_1538 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains25.09121.400922.999120.518
LEAShoots from the seedlings (10 cm shoot stage)16.18415.201622.395313.3794
INF1Young developing inflorescences (5mm)13.388410.60513.88369.46183
INF2Developing inflorescences (1-1.5 cm)11.846111.375211.613811.0569
ROORoots from the seedlings (10 cm shoot stage)16.320220.078217.314919.941
NODDeveloping tillers at six leaf stage, 3rd internode9.416378.168858.0750421.3986
CAR5Developing grain, bracts removed (5 DPA)10.85539.3548112.3759.08195
CAR15Developing grain, bracts removed (15 DPA)4.470234.340195.863619.70467



CDS Structure of MLOC_1538






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_1538.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_1538.1CUST_11446_PI427708083AvailableAvailablecontig_11360 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g51700.1 -2 1e-69 219 107/110 (97%) 13101.m05396 protein ras-related protein, putative, expressed
TAIR PP10 AT1G22740.1 -2 2e-59 192 92/108 (85%) | Symbols: RAB7, ATRABG3B, RAB75, RABG3B | RAB GTPase homolog G3B | chr1:8049247-8050494 FORWARD LENGTH=203