MLOC_15338 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8145660.3938430.9654850.649319
LEAShoots from the seedlings (10 cm shoot stage)1.987223.341472.943592.22034
INF1Young developing inflorescences (5mm)0.2613270.268140.08062650.196467
INF2Developing inflorescences (1-1.5 cm)0.06771990.032559300.0710491
ROORoots from the seedlings (10 cm shoot stage)4.508264.075843.72654.50836
NODDeveloping tillers at six leaf stage, 3rd internode0.2452170.05815610.8460210.646915
CAR5Developing grain, bracts removed (5 DPA)0.04255850.04046510.03957410.0441702
CAR15Developing grain, bracts removed (15 DPA)0.02863550.033674500.106261



CDS Structure of MLOC_15338






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15338.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_15338.1CUST_2241_PI427708083AvailableAvailablecontig_157044 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g57560.1 +2 3e-62 210 130/213 (61%) 13102.m06649 protein tyrosine protein kinase domain containing protein, putative, expressed
TAIR PP10 AT4G00330.1 +2 4e-27 111 53/105 (50%) | Symbols: CRCK2 | calmodulin-binding receptor-like cytoplasmic kinase 2 | chr4:142787-144427 REVERSE LENGTH=411