MLOC_15337 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains42.955240.150248.525443.6086
LEAShoots from the seedlings (10 cm shoot stage)67.4062108.63989.737775.7638
INF1Young developing inflorescences (5mm)23.27624.670330.938921.4414
INF2Developing inflorescences (1-1.5 cm)34.833534.86436.992638.4287
ROORoots from the seedlings (10 cm shoot stage)86.795392.475781.098113.157
NODDeveloping tillers at six leaf stage, 3rd internode82.178298.6119112.99332.373
CAR5Developing grain, bracts removed (5 DPA)45.46543.582348.997443.9687
CAR15Developing grain, bracts removed (15 DPA)69.239878.651271.0329159.848



CDS Structure of MLOC_15337






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15337.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366236NoneNoneNoneNone
MLOC_15337.5CUST_1521_PI427708080AvailableAvailablecontig_157044 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g18947.2 +2 2e-105 307 143/168 (85%) 13111.m01914 protein zinc finger, C3HC4 type domain containing protein, expressed
TAIR PP10 AT5G41350.1 +2 2e-46 157 88/203 (43%) RING/U-box superfamily protein | chr5:16542026-16543092 REVERSE LENGTH=212