MLOC_15271 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.0777570.2677970.1050830.170623
LEAShoots from the seedlings (10 cm shoot stage)000.2056970.155396
INF1Young developing inflorescences (5mm)0.2117190.3442870.08652940.163353
INF2Developing inflorescences (1-1.5 cm)0.5953220.302860.3757770.423377
ROORoots from the seedlings (10 cm shoot stage)0.1259590.7246860.2423180.601123
NODDeveloping tillers at six leaf stage, 3rd internode0.06225261.069011.247013.16822
CAR5Developing grain, bracts removed (5 DPA)1.445290.6157720.7734120.779243
CAR15Developing grain, bracts removed (15 DPA)0.386570.5494450.6833340.911103



CDS Structure of MLOC_15271






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15271.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_15271.1CUST_2234_PI427708083AvailableAvailablecontig_1570289 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g45080.1 +3 4e-30 124 56/107 (52%) 13108.m04915 protein expressed protein
TAIR PP10 AT1G15780.1 +3 9e-15 76 32/88 (36%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). | chr1:5430446-5435921 REVERSE LENGTH=1335