MLOC_15246 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.88999.0755910.91349.48152
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0.105128000.100207
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)29.471422.523827.364125.9443
NODDeveloping tillers at six leaf stage, 3rd internode00.01798270.06394320.128499
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_15246






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15246.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_15246.1CUST_2231_PI427708083AvailableAvailablecontig_1570222 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g19600.1 -3 5e-36 129 72/98 (73%) 13105.m02073 protein expansin precursor, putative, expressed
TAIR PP10 AT4G01630.1 -3 2e-22 92 58/86 (67%) | Symbols: ATEXPA17, ATEXP17, ATHEXP ALPHA 1.13, EXPA17 | expansin A17 | chr4:700653-701527 FORWARD LENGTH=255