MLOC_15227 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.966921.37921.37215.6671
LEAShoots from the seedlings (10 cm shoot stage)77.224391.331474.046758.096
INF1Young developing inflorescences (5mm)22.813118.966119.567914.3352
INF2Developing inflorescences (1-1.5 cm)18.873319.218720.906918.2629
ROORoots from the seedlings (10 cm shoot stage)1.960145.76237.462685.13175
NODDeveloping tillers at six leaf stage, 3rd internode46.865123.614620.865668.4927
CAR5Developing grain, bracts removed (5 DPA)24.21321.395824.443819.2189
CAR15Developing grain, bracts removed (15 DPA)1.97252.405142.201294.03039



CDS Structure of MLOC_15227






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15227.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_15227.2CUST_9300_PI427708080AvailableAvailablecontig_1570191 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g29370.1 +1 0.0 573 283/328 (86%) 13108.m03033 protein peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed
TAIR PP10 AT3G01480.1 +1 2e-165 483 239/328 (73%) | Symbols: CYP38, ATCYP38 | cyclophilin 38 | chr3:188569-190674 FORWARD LENGTH=437