MLOC_15192 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.25029.136910.50399.64664
LEAShoots from the seedlings (10 cm shoot stage)11.23711.420216.158410.4594
INF1Young developing inflorescences (5mm)12.790312.105713.929310.8303
INF2Developing inflorescences (1-1.5 cm)13.552413.009615.466914.5626
ROORoots from the seedlings (10 cm shoot stage)20.8713.396715.351116.6515
NODDeveloping tillers at six leaf stage, 3rd internode9.309914.687520.772745.3616
CAR5Developing grain, bracts removed (5 DPA)14.656415.072314.024713.7579
CAR15Developing grain, bracts removed (15 DPA)19.781120.315417.744744.1688



CDS Structure of MLOC_15192






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15192.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355442NoneNoneNoneNone
MLOC_15192.1CUST_17924_PI427708080AvailableAvailablecontig_1570102 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g69040.1 +2 4e-73 243 139/255 (55%) 13101.m07534 protein zinc finger, C3HC4 type domain containing protein, expressed
TAIR PP10 AT5G48655.3 +2 4e-20 92 65/233 (28%) RING/U-box superfamily protein | chr5:19731575-19732486 REVERSE LENGTH=203