MLOC_15181 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.369741.561821.593811.82165
LEAShoots from the seedlings (10 cm shoot stage)9.035664.582226.855955.97679
INF1Young developing inflorescences (5mm)0.1748050.1782660.1992630.17593
INF2Developing inflorescences (1-1.5 cm)0.2123440.1889460.3536510.27011
ROORoots from the seedlings (10 cm shoot stage)0.1263860.08990960.08951890.117416
NODDeveloping tillers at six leaf stage, 3rd internode4.629515.403283.2529215.796
CAR5Developing grain, bracts removed (5 DPA)4.24495.102965.062944.95461
CAR15Developing grain, bracts removed (15 DPA)0.02691940.105250.05864520.162913



CDS Structure of MLOC_15181






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15181.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368669NoneNoneNoneNone
MLOC_15181.1CUST_1506_PI427708080AvailableAvailablecontig_1570064 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g47890.1 -3 3e-128 406 267/578 (46%) 13111.m04780 protein GRAS family transcription factor domain containing protein, expressed
TAIR PP10 AT1G07530.1 -3 5e-82 284 160/345 (46%) | Symbols: SCL14, ATGRAS2, GRAS2 | SCARECROW-like 14 | chr1:2313828-2316137 REVERSE LENGTH=769