MLOC_15169 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.4829510.96797.825969.25163
LEAShoots from the seedlings (10 cm shoot stage)14.18138.784867.801348.73889
INF1Young developing inflorescences (5mm)13.929810.329912.593610.5107
INF2Developing inflorescences (1-1.5 cm)16.569311.097515.626215.3643
ROORoots from the seedlings (10 cm shoot stage)1.486933.352613.461383.72075
NODDeveloping tillers at six leaf stage, 3rd internode2.31742.890825.4364610.6877
CAR5Developing grain, bracts removed (5 DPA)6.428015.982627.074886.28764
CAR15Developing grain, bracts removed (15 DPA)2.444642.139652.764835.62883



CDS Structure of MLOC_15169






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15169.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_15169.1CUST_9293_PI427708080AvailableAvailablecontig_1570014 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g60910.1 -1 0.0 1286 647/733 (88%) 13103.m06693 protein PPR repeat domain containing protein, putative, expressed
TAIR PP10 AT1G74850.1 -1 0.0 754 381/692 (55%) | Symbols: PTAC2 | plastid transcriptionally active 2 | chr1:28119237-28122314 REVERSE LENGTH=862