MLOC_15156 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.858313.185213.349611.8538
LEAShoots from the seedlings (10 cm shoot stage)7.532246.113376.951645.22007
INF1Young developing inflorescences (5mm)11.743115.581219.854411.8638
INF2Developing inflorescences (1-1.5 cm)21.067418.208121.585620.0035
ROORoots from the seedlings (10 cm shoot stage)6.0246610.987211.254810.4353
NODDeveloping tillers at six leaf stage, 3rd internode10.696310.541610.548729.1071
CAR5Developing grain, bracts removed (5 DPA)9.3398311.04659.486778.80392
CAR15Developing grain, bracts removed (15 DPA)4.697564.241555.4647210.0467



CDS Structure of MLOC_15156






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15156.6
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK358792NoneNoneNoneNone
MLOC_15156.6CUST_123_PI427708083AvailableAvailablecontig_1569993 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g19590.2 +2 5e-37 142 71/96 (74%) 13112.m02079 protein WD domain, G-beta repeat domain containing protein, expressed
TAIR PP10 AT2G47790.1 +2 6e-20 93 49/106 (46%) Transducin/WD40 repeat-like superfamily protein | chr2:19571102-19572946 REVERSE LENGTH=392