- Predicted Gene MLOC_15156
MLOC_15156 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 11.8583 | 13.1852 | 13.3496 | 11.8538 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 7.53224 | 6.11337 | 6.95164 | 5.22007 |
INF1 | Young developing inflorescences (5mm) | 11.7431 | 15.5812 | 19.8544 | 11.8638 |
INF2 | Developing inflorescences (1-1.5 cm) | 21.0674 | 18.2081 | 21.5856 | 20.0035 |
ROO | Roots from the seedlings (10 cm shoot stage) | 6.02466 | 10.9872 | 11.2548 | 10.4353 |
NOD | Developing tillers at six leaf stage, 3rd internode | 10.6963 | 10.5416 | 10.5487 | 29.1071 |
CAR5 | Developing grain, bracts removed (5 DPA) | 9.33983 | 11.0465 | 9.48677 | 8.80392 |
CAR15 | Developing grain, bracts removed (15 DPA) | 4.69756 | 4.24155 | 5.46472 | 10.0467 |
CDS Structure of MLOC_15156
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_15156.6
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os12g19590.2 |
+2 |
5e-37 |
142 |
71/96 (74%) |
13112.m02079 protein WD domain, G-beta repeat domain containing protein, expressed |
TAIR PP10 |
AT2G47790.1 |
+2 |
6e-20 |
93 |
49/106 (46%) |
Transducin/WD40 repeat-like superfamily protein | chr2:19571102-19572946 REVERSE LENGTH=392 |