MLOC_15152 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.7890612.355212.130110.2559
LEAShoots from the seedlings (10 cm shoot stage)10.68638.153638.429137.14346
INF1Young developing inflorescences (5mm)22.829520.184816.707315.9985
INF2Developing inflorescences (1-1.5 cm)14.919116.853415.902816.202
ROORoots from the seedlings (10 cm shoot stage)9.5922410.76467.6361710.9242
NODDeveloping tillers at six leaf stage, 3rd internode4.373396.118468.119318.3236
CAR5Developing grain, bracts removed (5 DPA)17.734817.398517.056215.5884
CAR15Developing grain, bracts removed (15 DPA)6.830785.892786.1605413.5663



CDS Structure of MLOC_15152






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15152.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_15152.1CUST_9290_PI427708080AvailableAvailablecontig_1569988 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g42180.1 +3 0.0 1387 800/981 (82%) 13107.m04404 protein exportin 1, putative, expressed
TAIR PP10 AT1G72560.3 +3 0.0 897 508/1000 (51%) | Symbols: PSD | ARM repeat superfamily protein | chr1:27325026-27329467 REVERSE LENGTH=988